Yes. The blastdb_aliastool is a BLAST+ application that allows you to aggregate BLAST databases or create subsets from them. When working with the traditional BLAST databases (based on GeneInfo identifiers (GIs)), you could create a subset with blastdb_aliastool by providing a GI list as your input file. We have now added support for Accession-Based BLAST databases. We have introduced new parameters for using sequence identifiers (SeqIDs), which are accession.version identifiers in this case. The new parameters are listed below.
Keywords: BLAST+ command line applications, BLAST+ executables, Accession-Based BLAST, managing BLAST databases